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paired-end reads
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1
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1.2k
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generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
7.1 years ago
teresati
▴ 10
1
vote
2
replies
1.5k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.1k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
941
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
2
replies
1.1k
views
DiffBind PE data
diffbind
paired-end reads
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
rbronste
▴ 60
0
votes
1
reply
1.2k
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.9 years ago
zwfanwz678
• 0
0
votes
0
replies
1.5k
views
Merge two BAM files into one paired-end file
paired-end reads
bam file
6.5 years ago
ioannis.vardaxis
▴ 30
0
votes
0
replies
947
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.4 years ago
guillaume.dachy
• 0
8 results • Page
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Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
Thank you James! This worked to fix the p-values. However, the plot still looks one-sided... any idea what's going on with the left side?…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
That ll be helpful. Thank you.
Votes
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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